Re: [PATCH] Add r-scran 1.2.0 and all its dependencies

2017-01-31 Thread Ricardo Wurmus
Ricardo Wurmus writes: > Ra writes: > >> Hi Ricardo, >> there was an issue with the r-shiny patch, the license was wrong. So this >> is the new set of patches. > > Thank you. I updated and pushed all patches up to r-shiny. The changes > are: > > * Changed the descriptions, so that they are ma

Re: [PATCH] Add r-scran 1.2.0 and all its dependencies

2016-12-29 Thread Ricardo Wurmus
Ra writes: > Hi Ricardo, > there was an issue with the r-shiny patch, the license was wrong. So this > is the new set of patches. Thank you. I updated and pushed all patches up to r-shiny. The changes are: * Changed the descriptions, so that they are made up of full sentences. * Added a prop

Re: [PATCH] Add r-scran 1.2.0 and all its dependencies

2016-12-28 Thread Ra
Hi Ricardo, there was an issue with the r-shiny patch, the license was wrong. So this is the new set of patches. On Tue, Dec 27, 2016 at 10:25 PM Ra wrote: > Dear Ricardo, > I try to satisfy all the requirements. What do you think ? > In attachment the patches. > > Shiny now is in web.scm > >

Re: [PATCH] Add r-scran 1.2.0 and all its dependencies

2016-12-27 Thread Ra
Dear Ricardo, I try to satisfy all the requirements. What do you think ? In attachment the patches. Shiny now is in web.scm I reformat the description and fixed the synopsis. I also re checked the licenses. I have created a single patch for each r-package. -- Raoul On Tue, Dec 27, 2016 at 6:0

Re: [PATCH] Add r-scran 1.2.0 and all its dependencies

2016-12-27 Thread Ra
On Tue, Dec 27, 2016 at 6:00 PM Ricardo Wurmus wrote: > > Ra writes: > > > guix import cran --archive=bioconductor scater > > > > I had to add the missing dependencies by hand, is there a recursive way > to do so? > > Yes, you can just pass “--recursive” or “-r” and the importer will spit > out

Re: [PATCH] Add r-scran 1.2.0 and all its dependencies

2016-12-27 Thread Ricardo Wurmus
Ra writes: > guix import cran --archive=bioconductor scater > > I had to add the missing dependencies by hand, is there a recursive way to do > so? Yes, you can just pass “--recursive” or “-r” and the importer will spit out package expressions for all unpackaged dependencies. A current limita

Re: [PATCH] Add r-scran 1.2.0 and all its dependencies

2016-12-27 Thread Ra
Hi Ricardo, On Tue, Dec 27, 2016 at 5:02 PM Ricardo Wurmus wrote: Hi Raoul, > in attachment a patch for the inclusion of an R/Bioconductor library named > "scran" https://bioconductor.org/packages/release/bioc/html/scran.html , > scran has a lot of dependencies and I placed those related to >

Re: [PATCH] Add r-scran 1.2.0 and all its dependencies

2016-12-27 Thread Ricardo Wurmus
Hi Raoul, > in attachment a patch for the inclusion of an R/Bioconductor library named > "scran" https://bioconductor.org/packages/release/bioc/html/scran.html , > scran has a lot of dependencies and I placed those related to > bioinformatics/bioconductor into bioinformatics.scm and those relate