Re: [PATCH] Add Bioconductor importer and updater.

Ludovic Courtès writes: > Ricardo Wurmus skribis: > >> From 616e5ca0d7d76718172b7f0373a10744e3df7731 Mon Sep 17 00:00:00 2001 >> From: Ricardo Wurmus >> Date: Wed, 16 Dec 2015 14:45:28 +0100 >> Subject: [PATCH] import: Add Bioconductor importer and updater. >> >> * guix/import/cran.scm (%bioco

Re: [PATCH] Add Bioconductor importer and updater.

Ricardo Wurmus skribis: > From 616e5ca0d7d76718172b7f0373a10744e3df7731 Mon Sep 17 00:00:00 2001 > From: Ricardo Wurmus > Date: Wed, 16 Dec 2015 14:45:28 +0100 > Subject: [PATCH] import: Add Bioconductor importer and updater. > > * guix/import/cran.scm (%bioconductor-updater, > latest-bioconduct

Re: [PATCH] Add Bioconductor importer and updater.

Ludovic Courtès writes: > Ricardo Wurmus skribis: > >> Ludovic Courtès writes: > >>> I was wondering whether this should be a separate script or not. A >>> precedent would be the ELPA importer, which takes a repository name as >>> an argument. We could have done the same with the CRAN import

Re: [PATCH] Add Bioconductor importer and updater.

Ricardo Wurmus writes: >> We could check whether the source URL starts with “mirror://cran”, no? >> And forget about the ‘r-repository’ property? > > I think so. I’ve just updated the patches. > >>> +++ b/guix/scripts/import/bioconductor.scm >> >> I was wondering whether this should be a separa

Re: [PATCH] Add Bioconductor importer and updater.

Ludovic Courtès writes: > Ricardo Wurmus skribis: > >> From 8829683fffc03dec7f2faecea75cdd7831ce1741 Mon Sep 17 00:00:00 2001 >> From: Ricardo Wurmus >> Date: Wed, 16 Dec 2015 14:45:28 +0100 >> Subject: [PATCH] import: Add Bioconductor importer and updater. >> >> * guix/import/cran.scm (biocon

Re: [PATCH] Add Bioconductor importer and updater.

Ricardo Wurmus skribis: > From 8829683fffc03dec7f2faecea75cdd7831ce1741 Mon Sep 17 00:00:00 2001 > From: Ricardo Wurmus > Date: Wed, 16 Dec 2015 14:45:28 +0100 > Subject: [PATCH] import: Add Bioconductor importer and updater. > > * guix/import/cran.scm (bioconductor->guix-package, > %bioconducto

Re: [PATCH] Add Bioconductor importer and updater.

Ricardo Wurmus writes: > The first two patches in this series are actually unrelated: the first > fixes an annoying bug in the CRAN importer; the second corrects an > outdated claim in the CRAN importer’s documentation. I pushed the first two patches already. Attached is a replacement for 0

[PATCH] Add Bioconductor importer and updater.

Hi Guix, Bioconductor is a large, popular repository of R packages for bioinformatics. It has coordinated, versioned releases (latest stable release is 3.2). The attached patches generalise the existing procedures used by the CRAN importer, so that with only little effort importers for other R r