Ricardo Wurmus skribis:
> Hi,
>
> Ricardo Wurmus writes:
>
>> Ludovic Courtès writes:
>>
Is there a better way to make sure that all (direct and transient)
runtime dependencies can be found through the PERL5LIB variable?
>>>
>>> Good question. The #:inputs parameter of build phases c
Hi,
Ricardo Wurmus writes:
> Ludovic Courtès writes:
>
>>> Is there a better way to make sure that all (direct and transient)
>>> runtime dependencies can be found through the PERL5LIB variable?
>>
>> Good question. The #:inputs parameter of build phases contains all the
>> inputs (native, nor
On Tue, 21 Jul 2015 10:41:19 +0200
Ricardo Wurmus wrote:
> +(define-public bioperl-minimal
> + (let* ((inputs `(("perl-module-build" ,perl-module-build)
> + ("perl-data-stag" ,perl-data-stag)
> + ("perl-libwww" ,perl-libwww)
> + ("perl-uri" ,
Ludovic Courtès writes:
>> Is there a better way to make sure that all (direct and transient)
>> runtime dependencies can be found through the PERL5LIB variable?
>
> Good question. The #:inputs parameter of build phases contains all the
> inputs (native, normal, and propagated) when not cross-c
Ricardo Wurmus skribis:
> Ludovic Courtès writes:
[...]
>> There are two cases:
>>
>> 1. When using BioPerl as a library, users will also have Perl
>> installed, so ‘guix package’ will report the right value for
>> PERL5LIB. No problem here.
>>
>> 2. When using just the executab
Ludovic Courtès writes:
+(native-search-paths (list (search-path-specification
+(variable "PERL5LIB")
+(files '("lib/perl5/site_perl")
>>>
>>> Why is it needed? At first sight it looks wrong because PERL5LIB
Ricardo Wurmus skribis:
> Ludovic Courtès writes:
>
>> Ricardo Wurmus skribis:
>>
>>> From e8cffdb9e7a2447657b3f700b2f0beb00ad0f98e Mon Sep 17 00:00:00 2001
>>> From: Ricardo Wurmus
>>> Date: Wed, 3 Jun 2015 17:44:20 +0200
>>> Subject: [PATCH] gnu: Add BioPerl.
>>>
>>> * gnu/packages/bioinform
Ludovic Courtès writes:
> Ricardo Wurmus skribis:
>
>> From e8cffdb9e7a2447657b3f700b2f0beb00ad0f98e Mon Sep 17 00:00:00 2001
>> From: Ricardo Wurmus
>> Date: Wed, 3 Jun 2015 17:44:20 +0200
>> Subject: [PATCH] gnu: Add BioPerl.
>>
>> * gnu/packages/bioinformatics.scm (bioperl-minimal): New var
Ricardo Wurmus skribis:
> From e8cffdb9e7a2447657b3f700b2f0beb00ad0f98e Mon Sep 17 00:00:00 2001
> From: Ricardo Wurmus
> Date: Wed, 3 Jun 2015 17:44:20 +0200
> Subject: [PATCH] gnu: Add BioPerl.
>
> * gnu/packages/bioinformatics.scm (bioperl-minimal): New variable.
[...]
> +(define-public bio
I would expect python-biopython - silly as it looks.
Pj.
Andreas Enge skribis:
> On Wed, Jun 03, 2015 at 05:53:14PM +0200, Ricardo Wurmus wrote:
>> +(name "bioperl-minimal")
>
> according to the naming standard, this should probably be called perl-bio,
> in analogy with "libwww-perl becomes perl-libwww".
>
>> (name "python-biopython")
>
> Actu
Hello,
On Wed, Jun 03, 2015 at 05:53:14PM +0200, Ricardo Wurmus wrote:
> +(name "bioperl-minimal")
according to the naming standard, this should probably be called perl-bio,
in analogy with "libwww-perl becomes perl-libwww".
> (name "python-biopython")
Actually, then this should be "py
>From e8cffdb9e7a2447657b3f700b2f0beb00ad0f98e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus
Date: Wed, 3 Jun 2015 17:44:20 +0200
Subject: [PATCH] gnu: Add BioPerl.
* gnu/packages/bioinformatics.scm (bioperl-minimal): New variable.
---
gnu/packages/bioinformatics.scm | 36 +++
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