d above we must first resolve the licensing
> issues.
>
> I sent Erik an e-mail a week ago asking to add licenses to these
> projects, and he told me he will look into this soon. Feel free to keep
> reminding him to look into this :).
>
> Kind regards,
> Roel Janssen
>
&
#x27;t need to update the
hashes and urls for bamtools-src, vcflib-src, tabixpp-src, etc.
On Mon, 2 May 2016 at 23:21 Ricardo Wurmus
wrote:
>
> Hi Rob,
>
> > A guix-friendly licensed variant caller.
> >
> > From 78fb1be26ca1a0ac768ce5b98f7fd9f467870b84 Mon Sep 17 00
A guix-friendly licensed variant caller.
>From 78fb1be26ca1a0ac768ce5b98f7fd9f467870b84 Mon Sep 17 00:00:00 2001
From: Rob Syme
Date: Mon, 2 May 2016 16:46:53 +0800
Subject: [PATCH] gnu: Add freebayes
* gnu/packages/bioinformatics.scm (freebayes): New variable.
---
gnu/packa
t;>
> >> On 28/04/16 16:27, Ricardo Wurmus wrote:
> >>> Ben Woodcroft writes:
> >>>
> >>>> On 28/04/16 15:19, Ricardo Wurmus wrote:
> >>>>> Rob Syme writes:
> >>>>>
> >>>>>> * gnu/packages/p
I'm no expert, so please take as long as you need to look over this. I've
attached a patch that includes the addition of the patch path to
dist_patch_DATA.
-r
On Thu, 28 Apr 2016 at 13:26 Ben Woodcroft wrote:
>
>
> On 28/04/16 15:19, Ricardo Wurmus wrote:
> > Rob Sym
* gnu/packages/patches/ruby-symlinkfix.patch: New patch to fix issue #1448.
* gnu/packages/ruby.scm (ruby): Update to 2.3.1 including symlink patch.
---
gnu/packages/patches/ruby-symlinkfix.patch | 53
++
gnu/packages/ruby.scm | 5 +--
2 files cha
Yeah, patching that one line in lib/rubygems/packge.rb works well. I'll
clean it up and send in a patch to guix in the morning. Thanks for pointing
me in the right direction.
-r
On Wed, 27 Apr 2016 at 21:19 Rob Syme wrote:
> Oh, wait. I think we need the patches from PR#1457 (
Oh, wait. I think we need the patches from PR#1457 (
https://github.com/rubygems/rubygems/pull/1457/files). I'll make a patch
and see.
On Wed, 27 Apr 2016 at 21:11 Rob Syme wrote:
> Ah, good thinking Ben, thanks. I've had a quick look, and the rubygems
> included in ruby versi
to 2.3.1 fixes
everything.
-r
P.S. I certainly didn't mean to insinuate that this was the fault of
Ricardo (or you, for that matter). Thanks to all contributors!
On Wed, 27 Apr 2016 at 20:26 Ben Woodcroft wrote:
> Hi Rob,
>
> On 27/04/16 20:39, Rob Syme wrote:
> > Hi all
> &g
Hi all
Running `guix environment --ad-hoc ruby-ansi` fails for me (and others).
The package definition uses the ruby-build-system but fetches the tar.gz
directly from github instead of from rubygems. I'll try and find time to
have a closer look, but if Ricardo has any time, he might be able to deb
Thanks!
On Wed, 16 Mar 2016 at 16:50 Leo Famulari wrote:
> On Fri, Mar 11, 2016 at 03:55:47AM +0000, Rob Syme wrote:
> > Dear Guix,
> >
> > I have attached the amended patch to add the CodingQuarry gene predictor
> > (v2.0). Thanks for the kind feedback on my previo
Dear Guix,
I have attached the amended patch to add the CodingQuarry gene predictor
(v2.0). Thanks for the kind feedback on my previous patch. I have tried to
make the formatting etc look as close as I can to the other GNU patches,
but let me know if I've missed anything.
Rob Syme
Res
Sure, I'll do that. Thanks for the feedback.
-r
On Wed, 9 Mar 2016, 07:40 Leo Famulari, wrote:
> On Tue, Mar 08, 2016 at 05:13:34PM +0800, Rob Syme wrote:
>
> Thank you for the patch!
>
> > * gnu/packages/bioinformatics.scm: Add codingquarry package description
>
>
* gnu/packages/bioinformatics.scm: Add codingquarry package description
---
gnu/packages/bioinformatics.scm | 31 +++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5d53dc9..2e665db 100644
--- a/gnu
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