Update: Implementing guix system rollback / switch-generation

2016-07-08 Thread Chris Marusich
Hi Guix, I've attached a preliminary patch which adds rudimentary roll-back and switch-generation commands to "guix system". Currently, the commands just flip symlinks, which is part of the first milestone that Ludo suggested in the following thread: https://lists.gnu.org/archive/html/guix-devel

Re: pre-release [PATCH] git-service

2016-07-08 Thread ng0
Ricardo Wurmus writes: > Thompson, David writes: > >> On Fri, Jul 8, 2016 at 11:53 AM, ng0 wrote: >>> I need some feedback on the git-service. >>> The inserted patch gives me this output: >>> >>> >>> +(define-record-type* >>> + git-configuration make-git-configuration >>> + git-configuration

Re: [PATCH] Add Ribotaper.

2016-07-08 Thread Ben Woodcroft
On 07/07/16 23:45, Ricardo Wurmus wrote: Ben Woodcroft writes: On 07/07/16 19:26, Ricardo Wurmus wrote: Hi Guix, this patch adds a bioinformatics tool called "Ribotaper". It needs a somewhat older version of bedtools, because the output format produced by bedtools changed after version 2.

Re: [PATCH] gnu: Add python-dendropy.

2016-07-08 Thread Ben Woodcroft
On 09/07/16 02:15, Leo Famulari wrote: On Sat, Jul 09, 2016 at 12:04:36AM +1000, Ben Woodcroft wrote: +(define-public python-dendropy + ;; There are two known test failures thare will be fixed in the next ^

Re: pre-release [PATCH] git-service

2016-07-08 Thread Ricardo Wurmus
Thompson, David writes: > On Fri, Jul 8, 2016 at 11:53 AM, ng0 wrote: >> I need some feedback on the git-service. >> The inserted patch gives me this output: >> >> >> +(define-record-type* >> + git-configuration make-git-configuration >> + git-configuration? >> + (git git-configuratio

[PATCH] gnu: Add reptyr.

2016-07-08 Thread Alex Griffin
This patch adds reptyr, a tool for reparenting a running program to a new terminal. I put it in screen.scm because it is usually used to move a process into a screen or tmux session. Also somewhat related, I think the file tmux.scm should merge with screen.scm. Thanks, -- Alex Griffin From 8e48

Re: pre-release [PATCH] git-service

2016-07-08 Thread Thompson, David
On Fri, Jul 8, 2016 at 11:53 AM, ng0 wrote: > I need some feedback on the git-service. > The inserted patch gives me this output: > > > +(define-record-type* > + git-configuration make-git-configuration > + git-configuration? > + (git git-configuration-git ; > + (default git

Re: [PATCH] gnu: Add netcat-openbsd. [v2]

2016-07-08 Thread ng0
Ludovic Courtès writes: > ng0 skribis: > >> On 2016-06-22(11:23:28PM+0200), Ludovic Courtès wrote: >>> Hi! >>> >>> ng0 skribis: >>> >>> > * gnu/packages/admin.scm (netcat-openbsd): New variable. >>> > * patches/netcat-openbsd-0001-port-to-linux-with-libbsd.patch, >>> > patches/netcat-openbsd-000

Re: [PATCH] gnu: Add python-dendropy.

2016-07-08 Thread Leo Famulari
On Sat, Jul 09, 2016 at 12:04:36AM +1000, Ben Woodcroft wrote: > +(define-public python-dendropy > + ;; There are two known test failures thare will be fixed in the next ^ typo? Otherwise, it l

Re: ola

2016-07-08 Thread John J Foerch
Alex Vong writes: > Hi John, > > John J Foerch writes: > >> Hello, >> >> I'm trying to build OLA (Open Lighting Architecture) and I ran into some >> difficulty. Ola is often used as a service, but at this point all I'm >> interested in is making an ordinary package. The build times out after >

pre-release [PATCH] git-service

2016-07-08 Thread ng0
I need some feedback on the git-service. The inserted patch gives me this output: ng0@shadowwalker ~/guix-git-service$ ./pre-inst-env guix system vm ~/testvm.scm Backtrace: In ice-9/boot-9.scm: 1724: 19 [%start-stack load-stack ...] 1729: 18 [#] In unknown file: ?: 17 [primitive-load "/home/ng0/gu

[PATCH] gnu: Add lapack-with-lapacke.

2016-07-08 Thread Ricardo Wurmus
* gnu/packages/maths.scm (lapack-with-lapacke): New variable. --- gnu/packages/maths.scm | 8 1 file changed, 8 insertions(+) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 68fb272..4abbb2f 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -350,6 +35

[PATCH] Add LAPACKE

2016-07-08 Thread Ricardo Wurmus
Hi Guix, here's an alternative to the patch provided here: https://lists.gnu.org/archive/html/guix-devel/2016-06/msg00099.html Instead of building LAPACKE as part of the lapack package this patch adds a new package "lapack-with-lapacke". I did this because an increase in closure size of 20M

Re: ola

2016-07-08 Thread Alex Vong
Hi John, John J Foerch writes: > Hello, > > I'm trying to build OLA (Open Lighting Architecture) and I ran into some > difficulty. Ola is often used as a service, but at this point all I'm > interested in is making an ordinary package. The build times out after > a certain point: > I try to bu

Re: ola

2016-07-08 Thread Ricardo Wurmus
John J Foerch writes: > I'm trying to build OLA (Open Lighting Architecture) and I ran into some > difficulty. Ola is often used as a service, but at this point all I'm > interested in is making an ordinary package. The build times out after > a certain point: Is anything happening in the bac

Re: [PATCH] gnu: Add di.

2016-07-08 Thread John J Foerch
Leo Famulari writes: > On Thu, Jul 07, 2016 at 12:30:11PM -0400, John J Foerch wrote: >> Any remaining blocking issues on this? > > Pushed as 614023981! Many thanks. -- John Foerch

ola

2016-07-08 Thread John J Foerch
Hello, I'm trying to build OLA (Open Lighting Architecture) and I ran into some difficulty. Ola is often used as a service, but at this point all I'm interested in is making an ordinary package. The build times out after a certain point: g++ -DHAVE_CONFIG_H -I.-I./include -I./include -W

[PATCH] gnu: Add python-dendropy.

2016-07-08 Thread Ben Woodcroft
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): New variables. * gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. --- gnu/local.mk | 1 + gnu/packages/bioinformatics.s

Re: bio package star

2016-07-08 Thread Ricardo Wurmus
Ben Woodcroft writes: > On 07/07/16 17:07, Ricardo Wurmus wrote: >> Ben Woodcroft writes: >> >>> On 07/07/16 15:52, Efraim Flashner wrote: http://hydra.gnu.org/build/1295673/log/raw Star currently fails to build on i686. Looking at the logs, it freaks out at an unsigned long int,

Re: bio package star

2016-07-08 Thread Ben Woodcroft
On 07/07/16 17:07, Ricardo Wurmus wrote: Ben Woodcroft writes: On 07/07/16 15:52, Efraim Flashner wrote: http://hydra.gnu.org/build/1295673/log/raw Star currently fails to build on i686. Looking at the logs, it freaks out at an unsigned long int, __uint128_t, which as far as I know isn't supp

Re: Stuck on KiCad dependency wxPython

2016-07-08 Thread Ricardo Wurmus
Leo Famulari writes: > On Thu, Jul 07, 2016 at 09:31:20AM +0300, Efraim Flashner wrote: >> /gnu/store/h38zwyj2a64dpai99gavv3anhk303xyp-wxwidgets-3.0.2/include/wx-3.0/wx/wx.h >> >> looks like you'll need (string-append "-I" (assoc-ref %build-inputs >> "wxwidgets") "/include/wx-3.0") as a configu

Re: [PATCH] gnu: Add di.

2016-07-08 Thread Alex Kost
Leo Famulari (2016-07-07 20:37 +0300) wrote: > On Thu, Jul 07, 2016 at 12:30:11PM -0400, John J Foerch wrote: >> Any remaining blocking issues on this? > > Not really... I've been struggling to write the comment that justifies > skipping the tests :) Nice comment after all :-) ("Obscure test fa