On Mon, 23 May 2016 00:28:26 -0400
Leo Famulari wrote:
> The failing test (helper_expand) seems to fail when it can't find
> `which`.
The failing test is test/helper-expand.c and it tries to do this:
int main ( int argc, char ** argv )
{
cmd_set_arguments ( argc, argv );
if ( setlocal
Leo Famulari writes:
> On Mon, May 23, 2016 at 12:52:00PM +0200, Ricardo Wurmus wrote:
>> * gnu/packages/machine-learning.scm (ghmm): New variable.
>
>> +(define-public ghmm
>> + ;; The latest release candidate is several years and a couple of fixes
>> have
>> + ;; been published since. This
Efraim Flashner writes:
> On Mon, May 23, 2016 at 04:57:16PM +0200, Ricardo Wurmus wrote:
>> * gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
>> ---
[...]
>> +(arguments `(#:substitutable? #f))
>
> why not?
Because it’s an R data
On Mon, May 23, 2016 at 11:29:00PM +0200, Ludovic Courtès wrote:
> Efraim Flashner skribis:
>
> > On Sun, May 22, 2016 at 07:28:36PM -0400, Leo Famulari wrote:
> >> Leo Famulari (1):
> >> gnu: grub: Re-enable test.
> >>
> >> gnu/packages/grub.scm | 7 ++-
> >> 1 file changed, 2 insertions
Ludovic Courtès writes:
> Roel Janssen skribis:
>
>> Efraim Flashner writes:
>>
>>> On Mon, May 23, 2016 at 09:33:28AM +0200, Ricardo Wurmus wrote:
Leo Famulari writes:
>
> [...]
>
All previous releases might still be available via SVN, though, so maybe
we can find a way to
>From fc657a31b4a52628c09a0b634c49b71cce2230bc Mon Sep 17 00:00:00 2001
From: Roel Janssen
Date: Tue, 24 May 2016 00:14:59 +0200
Subject: [PATCH 1/2] gnu: Rename texlive to tex.
* gnu/local.mk (GNU_SYSTEM_MODULES): Rename texlive.scm to tex.scm.
* gnu/packages/texlive.scm: Rename file to tex.scm.
On Sun, 22 May 2016 22:34:07 -0400
Leo Famulari wrote:
> On Wed, May 11, 2016 at 11:34:52AM -0400, Kei Yamashita wrote:
> > Here's an updated patch.
>
> > From 68960221c70cd42165c2a4a42a1bf78e93d92035 Mon Sep 17 00:00:00
> > 2001 From: Kei Yamashita
> > Date: Wed, 11 May 2016 11:31:14 -0400
>
Ricardo Wurmus skribis:
> * guix/import/cran.scm (guix-name): Replace period and underscore with
> dash; always prepend package names with "r-".
[...]
> +(string-append "r-" (string-downcase
> + (regexp-substitute/global #f "(_|\\.)" name
> +
Roel Janssen skribis:
> Efraim Flashner writes:
>
>> On Mon, May 23, 2016 at 09:33:28AM +0200, Ricardo Wurmus wrote:
>>>
>>> Leo Famulari writes:
[...]
>>> All previous releases might still be available via SVN, though, so maybe
>>> we can find a way to generalise this and add an SVN origin a
Hello!
Leo Famulari skribis:
> As requested in the discussion on "Trustable guix pull" [0], I've
> recently started signing the commits I push to Savannah.
>
> At first, I set "gpgsign = true" in my Guix repo's Git config. This
> requires you to sign every commit you make. It's effective, but I
Hi!
Roel Janssen skribis:
> For the lack of a better place, I created a new file for texmaker.
> Maybe we should consider moving all LaTeX-related stuff into latex.scm.
>
> Here's a patch for Texmaker -- a decent LaTeX editor for the non-Emacs
> users ;-).
Maybe we could rename texlive.scm to t
Efraim Flashner skribis:
> On Sun, May 22, 2016 at 07:28:36PM -0400, Leo Famulari wrote:
>> I noticed that we disable a test in GRUB's test suite because it
>> required Parted and (presumably) had not packaged it yet.
>>
>> I added it to native-inputs and successfully built GRUB on x86_64 and
>>
On Mon, May 23, 2016 at 01:48:11PM +0200, Pjotr Prins wrote:
> Good news. The changelog for
>
> http://erlang.org/download/OTP-19.0-rc1.README
>
> says that
>
> OTP-13504Application(s): compiler
>
>The compiler will no longer put the compilation date
>and
On Mon, May 23, 2016 at 06:22:09PM +0100, Jeremy Robst wrote:
Welcome, and thanks for the patch!
Unfortunately, I can't seem to apply it to my source tree. Is anybody
else able to do so? I can't figure *why* it doesn't apply. Jeremy, are
you able to apply it with `patch -p1` or `git am`?
> +(def
Efraim Flashner writes:
> On Mon, May 23, 2016 at 01:59:07AM +0200, Roel Janssen wrote:
>> Dear Guix,
>>
>> For the lack of a better place, I created a new file for texmaker.
>> Maybe we should consider moving all LaTeX-related stuff into latex.scm.
>>
>> Here's a patch for Texmaker -- a decent
On Mon, May 23, 2016 at 04:57:16PM +0200, Ricardo Wurmus wrote:
> * gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
> ---
> gnu/packages/bioinformatics.scm | 26 ++
> 1 file changed, 26 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/
On Mon, May 23, 2016 at 01:59:07AM +0200, Roel Janssen wrote:
> Dear Guix,
>
> For the lack of a better place, I created a new file for texmaker.
> Maybe we should consider moving all LaTeX-related stuff into latex.scm.
>
> Here's a patch for Texmaker -- a decent LaTeX editor for the non-Emacs
>
* gnu/packages/maths.scm (hdf4): New variable
---
gnu/packages/maths.scm | 35 +++
1 file changed, 35 insertions(+)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 19ed44f..570cc32 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/mat
On Mon, May 23, 2016 at 12:52:00PM +0200, Ricardo Wurmus wrote:
> * gnu/packages/machine-learning.scm (ghmm): New variable.
> +(define-public ghmm
> + ;; The latest release candidate is several years and a couple of fixes have
> + ;; been published since. This is why we download the sources fro
On Mon, May 23, 2016 at 11:09:13AM +0200, Roel Janssen wrote:
>
> Leo Famulari writes:
>
> > On Mon, May 09, 2016 at 01:18:08PM +0200, Roel Janssen wrote:
> >> * gnu/packages/statistics.scm (r-zoo): New variable.
> >
> > Thanks, looks good!
> >
> > The patch no longer applies. Can you rebase it o
* guix/import/cran.scm (default-r-packages): New variable.
(description->package): Drop default R packages from list of inputs.
---
guix/import/cran.scm | 22 +-
1 file changed, 17 insertions(+), 5 deletions(-)
diff --git a/guix/import/cran.scm b/guix/import/cran.scm
index ff9
* guix/import/cran.scm (guix-name): Replace period and underscore with
dash; always prepend package names with "r-".
---
guix/import/cran.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/guix/import/cran.scm b/guix/import/cran.scm
index c1a9e8e..8b368af 100644
--- a/
* guix/import/cran.scm (guix-name): Move to top-level.
---
guix/import/cran.scm | 12 +++-
1 file changed, 7 insertions(+), 5 deletions(-)
diff --git a/guix/import/cran.scm b/guix/import/cran.scm
index 8b368af..0be5346 100644
--- a/guix/import/cran.scm
+++ b/guix/import/cran.scm
@@ -147,1
attached is a patch series that gives us a recursive CRAN importer. I still
haven't documented it in the manual, because I'm not sure if the
implementation is acceptable.
Simply put, the procedure that produces a package expression now returns
multiple values. The first is the package expression
* guix/import/cran.scm (guix-name): Replace period and underscore with
dash; always prepend package names with "r-".
---
guix/import/cran.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/guix/import/cran.scm b/guix/import/cran.scm
index c1a9e8e..8b368af 100644
--- a/
* guix/scripts/import.scm (guix-import): Print list of expressions.
---
guix/scripts/import.scm | 16 ++--
1 file changed, 10 insertions(+), 6 deletions(-)
diff --git a/guix/scripts/import.scm b/guix/scripts/import.scm
index e54744f..5cda3dd 100644
--- a/guix/scripts/import.scm
+++ b/
* guix/scripts/import/cran.scm: (%options): Add "recursive" option.
(guix-import-cran): Handle "recursive" option.
---
guix/scripts/import/cran.scm | 26 --
1 file changed, 20 insertions(+), 6 deletions(-)
diff --git a/guix/scripts/import/cran.scm b/guix/scripts/import/cra
* guix/import/cran.scm (recursive-import): New variable.
---
guix/import/cran.scm | 21 +
1 file changed, 21 insertions(+)
diff --git a/guix/import/cran.scm b/guix/import/cran.scm
index 522df3e..907441e 100644
--- a/guix/import/cran.scm
+++ b/guix/import/cran.scm
@@ -33,8 +33,
* guix/import/cran.scm (description->package): Return package
dependencies in addition to generated package expression.
---
guix/import/cran.scm | 58
1 file changed, 31 insertions(+), 27 deletions(-)
diff --git a/guix/import/cran.scm b/guix/
* gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fbaae12..51c371c 100644
--- a/gnu/packages
Ben Woodcroft writes:
> On 22/05/16 09:24, Lukas Gradl wrote:
>> An updated patch is attached.
>
> Applied as '88bb419' with minor changes to the commenting and commit
> message.
Thank you for your help!
Best,
Lukas
* gnu/packages/statistics.scm (r-runit): New variable.
---
gnu/packages/statistics.scm | 20
1 file changed, 20 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 43f9042..5961306 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packa
On Sat, Apr 09, 2016 at 12:56:49PM +0200, Pjotr Prins wrote:
> On Tue, Apr 05, 2016 at 02:46:42PM -0400, Leo Famulari wrote:
> > On Tue, Apr 05, 2016 at 12:02:28PM +0200, Pjotr Prins wrote:
> > > I received a nice reply from Joe Armstrong. Basically he agrees with
> > > the idea of deterministic bu
Efraim Flashner writes:
> On Mon, May 23, 2016 at 01:56:17AM +0200, Roel Janssen wrote:
>> Dear Guix,
>>
>> I need poppler-qt5 for Texmaker (see other patch), so here is a patch:
>>
>> >From ef330ec9125246f81094ac36c2f564f3f3fca029 Mon Sep 17 00:00:00 2001
>> From: Roel Janssen
>> Date: Mon, 2
On Mon, May 23, 2016 at 01:56:17AM +0200, Roel Janssen wrote:
> Dear Guix,
>
> I need poppler-qt5 for Texmaker (see other patch), so here is a patch:
>
> >From ef330ec9125246f81094ac36c2f564f3f3fca029 Mon Sep 17 00:00:00 2001
> From: Roel Janssen
> Date: Mon, 23 May 2016 01:47:11 +0200
> Subject
Ricardo Wurmus writes:
> Roel Janssen writes:
>
>> Ricardo Wurmus writes:
>>
>>> * gnu/packages/bioinformatics.scm (pardre): New variable.
>>> ---
>>> gnu/packages/bioinformatics.scm | 41
>>> +
>>> 1 file changed, 41 insertions(+)
>>>
>>> diff --git a/
* gnu/packages/machine-learning.scm (ghmm): New variable.
---
gnu/packages/machine-learning.scm | 94 ++-
1 file changed, 93 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/machine-learning.scm
b/gnu/packages/machine-learning.scm
index cbc7509..584aeae
Roel Janssen writes:
> Ricardo Wurmus writes:
>
>> * gnu/packages/bioinformatics.scm (pardre): New variable.
>> ---
>> gnu/packages/bioinformatics.scm | 41
>> +
>> 1 file changed, 41 insertions(+)
>>
>> diff --git a/gnu/packages/bioinformatics.scm
>> b
Ricardo Wurmus writes:
> * gnu/packages/bioinformatics.scm (pardre): New variable.
> ---
> gnu/packages/bioinformatics.scm | 41
> +
> 1 file changed, 41 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> in
Efraim Flashner writes:
> On Mon, May 23, 2016 at 09:33:28AM +0200, Ricardo Wurmus wrote:
>>
>> Leo Famulari writes:
>>
>> > On Tue, May 03, 2016 at 09:36:28AM +0200, Roel Janssen wrote:
>> >> * gnu/packages/bioinformatics.scm (r-edger): New variable.
>> >
>> > I tried to build this (and limma
* gnu/packages/bioinformatics.scm (pardre): New variable.
---
gnu/packages/bioinformatics.scm | 41 +
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 787f386..e681c56 100644
--- a/gnu/pac
Leo Famulari writes:
> On Mon, May 09, 2016 at 01:18:08PM +0200, Roel Janssen wrote:
>> * gnu/packages/statistics.scm (r-zoo): New variable.
>
> Thanks, looks good!
>
> The patch no longer applies. Can you rebase it on the current master
> branch and re-send?
Thanks for looking at it! Here is t
On Sun, May 22, 2016 at 07:28:36PM -0400, Leo Famulari wrote:
> I noticed that we disable a test in GRUB's test suite because it
> required Parted and (presumably) had not packaged it yet.
>
> I added it to native-inputs and successfully built GRUB on x86_64 and
> i686.
>
> Leo Famulari (1):
>
On Mon, May 23, 2016 at 09:33:28AM +0200, Ricardo Wurmus wrote:
>
> Leo Famulari writes:
>
> > On Tue, May 03, 2016 at 09:36:28AM +0200, Roel Janssen wrote:
> >> * gnu/packages/bioinformatics.scm (r-edger): New variable.
> >
> > I tried to build this (and limma), but the source tarball is no lon
Leo Famulari writes:
> On Tue, May 03, 2016 at 09:36:28AM +0200, Roel Janssen wrote:
>> * gnu/packages/bioinformatics.scm (r-edger): New variable.
>
> I tried to build this (and limma), but the source tarball is no longer
> available. I couldn't find any archived releases on the bioconductor
> s
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