[gmx-users] Hello: Forcefield and potentials for DNA-zinc finger complex

Hello, I have a DNA-Zinc finger complex. What are the suitable forcefields for that type of complexes (the zinc ion is coordinated to 4 deprotonated cysteines)? I need to do some molecular minimization and dynamics including the nucelic acid sequence. Looking for some help. Thank you. Ne

[gmx-users] Converting pdb to Amber (to use with ffamber99)

Hi all, I am looking for a simple way to convert amino acid and nucleic residues from the PDB standard to the AMBER Nomenclature (to use with ffamber99 in GROMACS). Your help is appreciated. Nehme. ___ gmx-users mailing listgmx-users@gromacs.