[gmx-users] Replicate Triclinic Bilayer

I would like to replicate the tilted DPPC gel phase from Marrink's website laterally, so that I have 4 times the area. But since the coupling is anisotropic, there are 9 box dimensions, and the triclinic geometry confuses me. I have seen that you can use editconf and -translate, followed by mergin

[gmx-users] Reshape triclinic box to rectangular using trjconv?

My simulation was performed within a triclinic box and I would like to reshape it into a rectangular box for post-processing analysis. I tried "/trjconv -o traj.pdb -ur rect -pbc -mol " but the new .pdb file still has triclinic geometry. Can someone please help? Thanks! Max -- gmx-users mailing