Thanks for your reply,
my whole pdb file includes an equilibrated membrane bilayer, constructed with
VMD for NAMD. I used the CHARMM27 FF while constructing it.
Now, I wanted to convert this system for a run in Gromacs.
To solve my issus, I divided my system into four new pdb's (ion, water, lipi
One of my issues is now solved.
As you guessed, the PBD was in an improper format.
After solving this small issues, I read about the need for an lipids.itp and
pope.itp file. I found these tutorial (link below) for the itp file
construction. Can I adept these steps for the construction of corre
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