Thanks XAvier and George for the reply. Yes the N and C terminus are on the
opposite sides of the bilayer. So I can take the values of the even TMs as
(180 - respective value), correct?
Regards,
Anirban
On Fri, Jun 4, 2010 at 8:00 PM, George Khelashvili
wrote:
> Hi,
>
> Your 150 degree angle is
Yes,
or inverse your sections from the index!
On Jun 5, 2010, at 10:10 AM, Anirban Ghosh wrote:
Thanks XAvier and George for the reply. Yes the N and C terminus are
on the opposite sides of the bilayer. So I can take the values of
the even TMs as (180 - respective value), correct?
Regards
Thanks a lot XAvier!
On Sat, Jun 5, 2010 at 2:10 PM, XAvier Periole wrote:
>
> Yes,
> or inverse your sections from the index!
>
> On Jun 5, 2010, at 10:10 AM, Anirban Ghosh wrote:
>
> Thanks XAvier and George for the reply. Yes the N and C terminus are on
> the opposite sides of the bilayer
Hello All,
Could some one please help me in introducing Fe2+ and FES molecule in protein
for simulation studies.
But before starting it, I am not able to generate topology file for the same.
I have tried to use HICUP database and used CNS topology file. but it is still
not working.
Please help
Th
Dear GMX users,
I want to calculate the relative binding free energy between a small molecule
binding to a protein of Wild Type and Thr -> Met using TI, so how should I
prepare the topology files of the protein using for TI calculation? Any
suggestions will be highly appreciated?
All the be
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