Re: [gmx-users] Using user-tables for simulations in vacuum

2008-07-18 Thread David van der Spoel
sapna sarupria wrote: Hello, The simulation does not run even for one step and therefore, it is not possible for me to check any of the components such as energy, temperature etc. There is no error message except for "segmentation fault". It does the same thing if I try to energy minimize the

Re: [gmx-users] (no subject)

2008-07-18 Thread Justin A. Lemkul
JMandumpal wrote: I think, setting tc groups = systemwill solve this issue. Bad idea. Treating the protein and the surrounding solvent together will lead to temperature differences between the two groups, such that the overall system will have the correct temperature, but the protein and