Re: [gmx-users] top2psf.pl is generating some bonds to atoms with index 0.

2010-10-20 Thread Justin A. Lemkul
comment there. -Justin Thanks. Regards, Joyce *From:* Justin A. Lemkul *To:* Gromacs Users' List *Sent:* Wednesday, October 20, 2010 2:25:26 *Subject:* Re: [gmx-users] top2psf.pl is generating some bonds to atoms wi

Re: [gmx-users] top2psf.pl is generating some bonds to atoms with index 0.

2010-10-19 Thread Kwee Hong
Joyce From: Justin A. Lemkul To: Gromacs Users' List Sent: Wednesday, October 20, 2010 2:25:26 Subject: Re: [gmx-users] top2psf.pl is generating some bonds to atoms with index 0. Kwee Hong wrote: > I executed the script at the therminal by typing > perl top2psf.pl -i top

Re: [gmx-users] top2psf.pl is generating some bonds to atoms with index 0.

2010-10-19 Thread Justin A. Lemkul
*Sent:* Wednesday, October 20, 2010 2:14:34 *Subject:* Re: [gmx-users] top2psf.pl is generating some bonds to atoms with index 0. Kwee Hong wrote: > Hi, > > I've got a top2psf.pl script from the web and used it to generate a psf file. Yet it generated some bonds to atoms with

Re: [gmx-users] top2psf.pl is generating some bonds to atoms with index 0.

2010-10-19 Thread Justin A. Lemkul
Kwee Hong wrote: Hi, I've got a top2psf.pl script from the web and used it to generate a psf file. Yet it generated some bonds to atoms with index 0 which should not occur. It causes VMD cannot load it and had a segmentation fault. vmd > Info) Using plugin psf for structure file /home/b