Kavyashree M wrote:
Sir,
My aim was to find out the difference between the monomer protein and
monomer of the dimer. it was for a preliminary analysis of the dynamics of
the structure and not a detailed study. But whatever the aim is, if the
protein is
stable during the simulation then can a
Sir,
My aim was to find out the difference between the monomer protein and
monomer of the dimer. it was for a preliminary analysis of the dynamics of
the structure and not a detailed study. But whatever the aim is, if the
protein is
stable during the simulation then can a comparison be made for th
With regards to run a monomeric simulation as resonable or not, I would
agree with Mark that it depends what you wish to learn, and depends on what
your hypothesis is.
Ragothaman
On Mon, Jul 18, 2011 at 7:49 AM, Kavyashree M wrote:
> Thank you Sir,
>
> The interface is connected by salt bridges
Thank you Sir,
The interface is connected by salt bridges and hydrogen bonding interactions
and not severely
hydrophobic. I tried simulating the monomers it stayed quite stable without
unfolding till 50ns.
Even the other structure which are reported to be dimer is a reported as a
trimer in solutio
Look at this paper where the simulation was done on a protein dimer:
http://www.ncbi.nlm.nih.gov/pubmed/17027497
On Mon, Jul 18, 2011 at 2:50 AM, Mark Abraham wrote:
> On 18/07/2011 3:08 PM, Kavyashree M wrote:
>
>> Dear users,
>>
>> I am working on a protein which is a dimer (in the crystal stru
On 18/07/2011 3:08 PM, Kavyashree M wrote:
Dear users,
I am working on a protein which is a dimer (in the crystal structure),
predicted according top PISA.
and some of the homologous proteins are dimers (covalent
/non-covalent) some are monomers.
There has not been any literature regarding the
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