Re: [gmx-users] problem with force fields while running membrane protein simulation

2011-02-04 Thread Justin A. Lemkul
Mark Abraham wrote: On 4/02/2011 9:00 PM, Mohana lakshmi wrote: Dear Mark I forgot to tell that i could run the same in gromacs older version i.e 3.3.3 but could not run in updated one. I don t know the reason. Please help me. The tutorial is not compatible with version 3.3.

Re: [gmx-users] problem with force fields while running membrane protein simulation

2011-02-04 Thread Mohana lakshmi
Thank you Mark. Mohanalakshmi N -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use

Re: [gmx-users] problem with force fields while running membrane protein simulation

2011-02-04 Thread Mark Abraham
On 4/02/2011 9:00 PM, Mohana lakshmi wrote: Dear Mark I forgot to tell that i could run the same in gromacs older version i.e 3.3.3 but could not run in updated one. I don t know the reason. Please help me. Please leave the context for the discussion in subsequent emails. You ca

Re: [gmx-users] problem with force fields while running membrane protein simulation

2011-02-04 Thread Mohana lakshmi
Dear Mark I forgot to tell that i could run the same in gromacs older version i.e 3.3.3 but could not run in updated one. I don t know the reason. Please help me. -- Mohanalakshmi N -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users

Re: [gmx-users] problem with force fields while running membrane protein simulation

2011-02-04 Thread Mark Abraham
On 4/02/2011 7:54 PM, Mohana lakshmi wrote: Dear all and Justin... I am trying to do membrane protein simulation by following justin's tutorial using gromacs 4.5.3 version. I selected ffG53a6 force field and pasted the content of lipid.itp file to the corresponding files as per the instructi