On 10/2/13 8:45 AM, Andrew Bostick wrote:
Dear Justin
Thanks for your quick reply.
What is reason of this issue?
My gro file contains 11383 lines.
11383-3=11380
This value is equal to second line.
Sorry, misread your initial post. One of two things is happening:
1. You've used an edit
On 10/2/13 8:21 AM, Andrew Bostick wrote:
Dear users,
I have used grompp command for minimising my system (protein and
membrane). I am getting the error:
---
Program grompp, VERSION 4.5.1
Source code file: confio.c, line: 744
Fatal error:
I
On 12/13/12 1:34 AM, Shine Devaraj wrote:
Dear users,
I have used grompp command for minimising my protein and ligand in membrane
after using inflategro command.
My system has no problem in visualizing in VMD. The protein is in proper
order
But I am getting the error
---
On 6/04/2011 4:30 AM, sarah k wrote:
dear gromacs users,
I'm solvating my protein in nitrogen box. I have changed my
spc216.gro, spc.itp and spce.itp files.
Don't. In the last 48 hours, I posted a procedure that used genconf to
make a box of solvent of a given density.
I face the followi
sarah k wrote:
dear gromacs users,
I'm solvating my protein in nitrogen box. I have changed my
spc216.gro, spc.itp and spce.itp files. I face the following error.
Changed? In what way? If you're solvating with nitrogen, why are you dealing
with water coordinates and topologies?
How can
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