Re: [gmx-users] how to make a index file

Please don't reply to the entire digest. On 9/13/13 9:25 AM, aixintiankong wrote: Dear prof. after i calculating the secondary strucure of residues frome 20 to 60 using do_dssp . And then i use xpm2ps to show the picture with ps.m2p, but the residue order number of y-axis start form

Re: [gmx-users] how to make a index file

On 9/11/13 11:33 PM, aixintiankong wrote: i want to analyze the change of secondary structure of the mainchian frome residue 20 to residue 60. so i want to make a index file that only contain the maninchian+H from residue 20 to residue 60. i have inputed the command " make_ndx -f em.pdb -o ind