Re: [gmx-users] Re: surface tension-crash at step 0

2013-04-05 Thread Elisabeth
The structure is taken from the end of previous simulation which terminates successfully. The initial structure should not be the problem. What I do only edit the last line (Z direction) of this structure to create vacuum. This the output from log file. Charge group distribution at step 0: 81 188

Re: [gmx-users] Re: surface tension-crash at step 0

2013-04-05 Thread Dr. Vitaly Chaban
But you have conf.gro On Fri, Apr 5, 2013 at 10:29 PM, Elisabeth wrote: > Well I am not getting the trajectory. Simulation crashes before any step > is calculated :( > > > On 5 April 2013 11:20, Dr. Vitaly Chaban wrote: > >> >> >>> My problem is NVT crashes at step 0 and no energies or any oth

Re: [gmx-users] Re: surface tension-crash at step 0

2013-04-05 Thread Dr. Vitaly Chaban
> My problem is NVT crashes at step 0 and no energies or any other output > file is written... > > > What about visualizing your interface? > On 5 April 2013 10:25, Dr. Vitaly Chaban wrote: > >> > Hi all, >> > >> > I have problem ruunning NVT with Z direction extended to get surface >> > t

Re: [gmx-users] Re: surface tension-crash at step 0

2013-04-05 Thread Elisabeth
Hi Vitaly, To get surface tension one needs to extend Z to get a surface. From bulk it is not possible to create a surface. My problem is NVT crashes at step 0 and no energies or any other output file is written... On 5 April 2013 10:25, Dr. Vitaly Chaban wrote: > > Hi all, > > > > I have pro