Re: [gmx-users] Re: Umbrella Sampling settings

2013-07-12 Thread Justin Lemkul
On 7/12/13 2:28 PM, Shima Arasteh wrote: Thanks for your replies. :-) So, if I want to the ion move in only z-direction, I need to set the 'pull_dim' Y Y N? Correct? But in tutorial Justin writes : pull_dim = N N Y: we are pulling only in the z-dimension. Thus, x and y are set to "no" (N) a

Re: [gmx-users] Re: Umbrella Sampling settings

2013-07-12 Thread Shima Arasteh
Thanks for your replies. :-) So, if I want to the ion move in only z-direction, I need to set the 'pull_dim' Y Y N? Correct? But in tutorial Justin writes : pull_dim = N N Y: we are pulling only in the z-dimension. Thus, x and y are set to "no" (N) and z is set to "yes" (Y). So what should I d