Re: [gmx-users] NPT-REMD

2013-08-25 Thread Michael Shirts
Pressure should fluctuate significantly. The estimator for the pressure that is generally used is very noisy. The question is, do the pressure averages over, say, 500 ps or 1 ns look about right? On Sun, Aug 25, 2013 at 5:07 PM, Mark Abraham wrote: > On Sun, Aug 25, 2013 at 6:22 PM, rahul seth >

Re: [gmx-users] NPT-REMD

2013-08-25 Thread Mark Abraham
On Sun, Aug 25, 2013 at 6:22 PM, rahul seth wrote: > Hi All, > > I have been trying to perform NPT-REMD with a Protein Substrate and water. > I am trying to use md+nose-hoover thermostat and parrinello-rahman > barostat. However, I am not quite sure about the tau-t and the tau-p that I > should be