Re: [gmx-users] KALP in DPPC tutorial reg

2013-10-17 Thread Justin Lemkul
On 10/14/13 7:47 AM, Sathya wrote: Hi, I'm doing the KALP-15 IN DPPC through the Justin's tutorial http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/03_solvate.html I have few questions. Please help me to solve it. 1) After the topol.top file has genera

Re: [gmx-users] KALP in DPPC tutorial reg

2013-10-14 Thread Justin Lemkul
On 10/14/13 2:44 AM, Sathya wrote: Hi, I'm doing the KALP-15 IN DPPC through the Justin's tutorial http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/03_solvate.html After generating the new position restrain file, I start to energy minimization to get the