An editor is a program to edit the text in a file: gedit, nano, vi, emacs,
... It'll be the equivalent of Windows' Notepad. Can you find a tutor
around to help you out with the basic usage of Linux? It's always difficult
to plunge into several different things at the same time, here 'using
linux',
a text editor
On Tue, Aug 27, 2013 at 1:54 PM, The One And Only wrote:
> What kind of editor should I open it in? I have Pymol, but I don't know if
> it's the right one.
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What kind of editor should I open it in? I have Pymol, but I don't know if
it's the right one.
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Hi ...,
You should have had a look at the topology file format in an earlier step.
At the end is a listing of molecules. As it says in the tutorial, you
replaced solvent by ions, and you have to make changes in the topology file
to match that replacement. Open the file in an editor, have a look ar
I've moved on from that point; now I'm stuck at where it asks me to remove
molecules of solvent from the topology file.
On Tue, Aug 27, 2013 at 1:33 PM, Tsjerk Wassenaar wrote:
> Hey :)
>
> Sorry for replying a bit late. But the issues you mention in this and the
> other posts are usually solve
Hey :)
Sorry for replying a bit late. But the issues you mention in this and the
other posts are usually solved by closely reading the text of the tutorial,
not only the commands.
Cheers,
Tsjerk
On Sun, Aug 25, 2013 at 3:44 AM, The One And Only wrote:
> Never mind, I'm dumb. I just realized t
Never mind, I'm dumb. I just realized that protein.pdb means i have to
specify which protein i want like "1qlz.pdb" and not actually type
"protein.pdb" BUT THANKS GUYS!!
On Sat, Aug 24, 2013 at 6:40 PM, The One And Only wrote:
> so how do i solve the protein.pdb issue?
>
>
> On Sat, Aug 24, 2013
so how do i solve the protein.pdb issue?
On Sat, Aug 24, 2013 at 6:37 PM, Justin Lemkul wrote:
>
>
> On 8/24/13 9:26 PM, The One And Only wrote:
>
>> that's something i know nothing about; I just graduated from high school
>> and I have no background or experience in open source projects or pro
On 8/24/13 9:26 PM, The One And Only wrote:
that's something i know nothing about; I just graduated from high school
and I have no background or experience in open source projects or programs
like pymol/gromacs. My professor wants me to be able to produce a setup,
simulation, and analysis withi
that's something i know nothing about; I just graduated from high school
and I have no background or experience in open source projects or programs
like pymol/gromacs. My professor wants me to be able to produce a setup,
simulation, and analysis within a week so I'm pretty desperate right now in
te
It sounds like you dont have the .pdb file in your working directory.
Perhaps you need to learn a bit about unix filesystems
On Sat, Aug 24, 2013 at 6:18 PM, The One And Only wrote:
> So I started following some tutorials online since I didn't get a response
> last time. the tutorial I'm using i
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