Re: [gmx-users] DSSP=> how to edit .eps file

Chih-Ying Lin wrote: HI How to pass an .m2p file to xpm2ps to change the dimensions of the plot, data point size, etc. ??? Use the -di flag of xpm2ps. http://manual.gromacs.org/current/online/m2p.html -Justin Thank you Lin Chih-Ying Lin wrote: Hi With the following two commands,

Re: [gmx-users] DSSP=> how to edit .eps file

Chih-Ying Lin wrote: Hi With the following two commands, do_dssp -f 6LYZ-MD.xtc -s 6LYZ-MD.tpr -o secondary-structure.xpm -sc secondary-structure.xvg xpm2ps -f secondary-structure.xpm -o secondary-structure.eps With GIMP, i can see the secondary structure plot. The legend indicates th

Re: [gmx-users] DSSP=> how to edit .eps file

On 2010-04-04 06.40, Chih-Ying Lin wrote: HI 1. dssp -n index.ndx => only atom numbers of one residue in the index.ndx => can dssp decide the exact second structure for the only one residue without considering other residues of protein? no. => can i get the same second structure for the res

Re: [gmx-users] DSSP => how to edit .eps file

On 4/3/10 9:19 PM, Justin A. Lemkul wrote: Chih-Ying Lin wrote: HI After running DSSP, .eps files are created. No they aren't; you create .eps files from the .xpm output that do_dssp generates. We can see the second structures of the all residues. I only want to see the change of the sec

Re: [gmx-users] DSSP => how to edit .eps file

Chih-Ying Lin wrote: HI After running DSSP, .eps files are created. No they aren't; you create .eps files from the .xpm output that do_dssp generates. We can see the second structures of the all residues. I only want to see the change of the second structures of some specific residues.