On 8/28/13 11:12 AM, Rama wrote:
Hello,
At NPT stage the two leaflets in DMPC bilayer is separated a while and comes
closer. Is this common in this stage or any thing goes wrong in
equillibration.
Depending on what the previous preparation steps were, this can certainly occur.
-Justin
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On 8/23/13 9:21 AM, Rama wrote:
Hi Justin,
Thanks for Kalp15-DPPC Bilayer tutorial.
I'm doing MD simulations for MMP protein-DMPC bilayer (128 lipids) complex
by following your protocol. I'm not familiar with MD simulation parameters.
Should I need to change any parameters in npt.mdp , nvt.m
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