How do you decrease the number of solvent molecules in a topology file? I
think this will solve my problem.
On Sat, Aug 24, 2013 at 9:08 PM, rajat desikan wrote:
> Hi,
> In *genion -s 1xyw-water.tpr -o 1xyw-solvated.pdb -conc 0.15 -neutral
> -pname NA -nname CL* , you have not used -p 1xys.top
Hi,
In *genion -s 1xyw-water.tpr -o 1xyw-solvated.pdb -conc 0.15 -neutral
-pname NA -nname CL* , you have not used -p 1xys.top Consequently, I
don't think the ions are written into your .top . Please check and see if
grompp works.
On Sun, Aug 25, 2013 at 9:34 AM, The One And Only wrote:
> I've
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