> > 1- Actually since I was focusing on rdf for C-C I didnt explain my
> > understanding from that post well. Anyway, I have only C and H in
the
> > system and no protein. You mean I have to make separate groups of C
> and
> > H for all polymer chains by hand? I trying to find a more smart way
> of
Moeed wrote:
Hello Justin,
1- Actually since I was focusing on rdf for C-C I didnt explain my
understanding from that post well. Anyway, I have only C and H in the
system and no protein. You mean I have to make separate groups of C and
H for all polymer chains by hand? I trying to find a m
Moeed wrote:
Hello,
1- In the manual I see rdf plot for Oxygen-Oxygen of SPC-water. I think
this shows the average O-O density between all water molecules. I read a
post saying that rdf is calculating C_C distances for each C on chain 1
for instance and all other C on the chain and other c
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