Yes, everyone knows why this happens. This question has been asked so often
that there is a FAQ on the Gromacs web-site:
http://www.gromacs.org/Documentation/Terminology/Periodic_Boundary_Conditions
Best wishes
Andreas
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From: gmx-users-boun...@gromacs.org [mailto:gmx-us
גדעון לפידות wrote:
Hi all,
I have been running nano second long simulations using Gromacs 4.0.7 and
connecting them to create a long time period. on the last run the
protein "jumped" out of the water box (the output files were viewed
using VMD) does anyone know why this could have happened?
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