Re: [gmx-users] XTC Error!!!

2010-05-27 Thread Justin A. Lemkul
deisy yurley rodriguez sarmiento wrote: Hi Everyone!!! As you begin to operate the mdrun, appear time after Fatal Error: XTC Error Is this the full error message? Usually an XTC error has more text after it. To this happen? As can be fixed? Do you have enough disk space? Did the simu

[gmx-users] XTC Error!!!

2010-05-27 Thread deisy yurley rodriguez sarmiento
Hi Everyone!!! As you begin to operate the mdrun, appear time after Fatal Error: XTC Error To this happen? As can be fixed? Thanks in advance Deisy Y. Rodriguez S. Practicante de Computos Avanzados Grupo de Investigacion en Fisicoquimica Teorica y Experimental GIFTEX Tel. 6344000  ext. 2792 Uni

Re: [gmx-users] xtc error

2010-01-30 Thread David van der Spoel
On 1/30/10 8:29 PM, neo lotus wrote: Hi ,I am running to program, suddenly in the 200 steps .program Pull In .( in .mdp file dt was 0.002 and nsteps was 400) and I see following error : { xtc error –maybe you are out of quota }.please guide me .thanks. Sounds like your file hit

[gmx-users] xtc error

2010-01-30 Thread neo lotus
Hi ,I am running to program, suddenly in the 200 steps .program Pull In .( in .mdp file dt was 0.002 and nsteps was 400) and I see following error : { xtc error –maybe you are out of quota }.please guide me .thanks. -- gmx-users mailing listgmx-users@gromacs.org http://lists.g

Re: [gmx-users] XTC error

2008-08-17 Thread David van der Spoel
huan wrote: Dear gmx developers and users. I was trying to extend my simulation using tpbconv, and then mdrun. Unfortunately, my simulation crash in the half way. it stated there" XTC error". The command i used was: tpbconv -s p1.tpr -f p1.trr -e p1.edr -n p1.ndx -extend 5000 -until 100

[gmx-users] XTC error

2008-08-17 Thread hhhh huan
Dear gmx developers and users. I was trying to extend my simulation using tpbconv, and then mdrun. Unfortunately, my simulation crash in the half way. it stated there" XTC error". The command i used was: tpbconv -s p1.tpr -f p1.trr -e p1.edr -n p1.ndx -extend 5000 -until 1 -o extend.tpr

Re: [gmx-users] xtc error

2007-10-10 Thread David van der Spoel
luciano.pgomes wrote: Hi, Hi All, I had this problem running MD on a single Debian machine: Program mdrun_d, VERSION 3.3.1 Source code file: stat.c, line: 257 Fatal error: XTC error There is no chance of being size exceeded of file or quota, or disk error. I compiled gromacs with gcc-3.4..

[gmx-users] xtc error

2007-10-10 Thread luciano.pgomes
Hi, > Hi All, > > I had this problem running MD on a single Debian machine: > > Program mdrun_d, VERSION 3.3.1 > Source code file: stat.c, line: 257 > > Fatal error: > XTC error > > > There is no chance of being size exceeded of file or quota, or disk error. > I compiled gromacs with gcc-3.4... >

Re: [gmx-users] xtc error

2007-10-10 Thread David van der Spoel
luciano.pgomes wrote: Hi All, I had this problem running MD on a single Debian machine: Program mdrun_d, VERSION 3.3.1 Source code file: stat.c, line: 257 Fatal error: XTC error it can also mean that your system is exploding. There is no chance of being size exceeded of file or quota, or

[gmx-users] xtc error

2007-10-10 Thread luciano.pgomes
Hi All, I had this problem running MD on a single Debian machine: Program mdrun_d, VERSION 3.3.1 Source code file: stat.c, line: 257 Fatal error: XTC error There is no chance of being size exceeded of file or quota, or disk error. I compiled gromacs with gcc-3.4... Does anyone know what this