[gmx-users] volume in ensemble

2012-04-06 Thread dina dusti
] volume in ensemble Hi Dina, In your experiments your volume doesn't change (significantly). But if you were to carve out a very small cube around a micelle, and track the molecules in there (neglecting diffusion), you'd see that the molecules sometimes expand and sometimes contra

Re: [gmx-users] volume in ensemble

2012-04-06 Thread Tsjerk Wassenaar
Hi Dina, In your experiments your volume doesn't change (significantly). But if you were to carve out a very small cube around a micelle, and track the molecules in there (neglecting diffusion), you'd see that the molecules sometimes expand and sometimes contract. That's what's happening on a micr

[gmx-users] volume in ensemble

2012-04-06 Thread dina dusti
Dear GROMACS Specialists, May I ask you to answer my question, Please? I  have several systems consist of water and different molecules (surfactant and etc. with same molecule number in all of them except water)  that equilibrated them in NPT ensemble, I wanted to have all of systems with same