Re: [gmx-users] the problem of the periodic boundary

2010-05-03 Thread Justin A. Lemkul
kecy...@sina.com wrote: Hello, I use the 2D periodic boundary along the x and y axises, it has a strange thing. my solvent is dodecane, I view the output trajectory in the VMD, for one molecule, it has some part in the left(top), and some in the right(bottom), it still connections to each

[gmx-users] the problem of the periodic boundary

2010-05-03 Thread kecy_wu
Hello, I use the 2D periodic boundary along the x and y axises, it has a strange thing. my solvent is dodecane,  I view the output  trajectory in the VMD, for one molecule, it has some part in the left(top), and some in the right(bottom), it still connections to each other, how to solve this pr