Re: [gmx-users] superimpose pdbs

2007-06-24 Thread Yang Ye
Pymol http://pldserver1.biochem.queensu.ca/~rlc/work/teaching/BCHM823/pymol/alignment/ It has a bit ease of use than g_confrm that it offers more richer choices for selecting atoms to be matched. See what fits to your needs. Regards, Yang Ye On 6/25/2007 1:10 AM, Alan wrote: Hi! It may be a

RES: [gmx-users] superimpose pdbs

2007-06-24 Thread Caio Julio Martins Veloso
Hi Alan, You may use TOPOFIT. Caio. -Mensagem original- De: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] nome de Alan Enviada em: domingo, 24 de junho de 2007 14:11 Para: Gromacs Assunto: [gmx-users] superimpose pdbs Hi! It may be a bit GMX off-topic: I am looking for a

Re: [gmx-users] superimpose pdbs

2007-06-24 Thread David van der Spoel
Alan wrote: Hi! It may be a bit GMX off-topic: I am looking for a command line superimpose application that would be able to get all individual pdb files in folder and generated new pdb versions of them 3D superimposed. g_confrms Something like what SuperPose (http://wishart.biology.ualbe

[gmx-users] superimpose pdbs

2007-06-24 Thread Alan
Hi! It may be a bit GMX off-topic: I am looking for a command line superimpose application that would be able to get all individual pdb files in folder and generated new pdb versions of them 3D superimposed. Something like what SuperPose ( http://wishart.biology.ualberta.ca/SuperPose/help.html) d