Re: [gmx-users] solvation of protein

2006-07-17 Thread Tsjerk Wassenaar
ubject: Re: [gmx-users] solvation of protein Hi, > Hi > when i am trying to solvate my protein in water box, i am not getting my > protein in the center of but at one face of water box with some atoms > outside waterbox. what should i do for this problem? should i move center > of my

RE: [gmx-users] solvation of protein

2006-07-16 Thread Srivastava, Dhiraj (UMC-Student)
: Discussion list for GROMACS users Subject: Re: [gmx-users] solvation of protein Hi, > Hi > when i am trying to solvate my protein in water box, i am not getting my > protein in the center of but at one face of water box with some atoms > outside waterbox. what should i do for this probl

Re: [gmx-users] solvation of protein

2006-07-16 Thread Haberl Florian
Hi, > Hi > when i am trying to solvate my protein in water box, i am not getting my > protein in the center of but at one face of water box with some atoms > outside waterbox. what should i do for this problem? should i move center > of my protein to the center of water box using some tcl script i

[gmx-users] solvation of protein

2006-07-15 Thread Srivastava, Dhiraj (UMC-Student)
Hi when i am trying to solvate my protein in water box, i am not getting my protein in the center of but at one face of water box with some atoms outside waterbox. what should i do for this problem? should i move center of my protein to the center of water box using some tcl script in vmd? how c