Re: [gmx-users] simulation crashed because of LINCS error

2010-05-24 Thread Justin A. Lemkul
. Your structure is likely not sufficiently energy-minimized to continue. -Justin Regards -- Sonali Dhindwal --- On *Mon, 24/5/10, Mark Abraham //* wrote: From: Mark Abraham Subject: Re: [gmx-users] simulation crashed because of LINCS error To: "Discussion list for GROMACS

Re: [gmx-users] simulation crashed because of LINCS error

2010-05-24 Thread sonali dhindwal
/5/10, Mark Abraham wrote: From: Mark Abraham Subject: Re: [gmx-users] simulation crashed because of LINCS error To: "Discussion list for GROMACS users" Date: Monday, 24 May, 2010, 1:00 PM - Original Message - From: sonali dhindwal Date: Monday, May 24, 2010 14:32 Subject:

Re: [gmx-users] simulation crashed because of LINCS error

2010-05-24 Thread Mark Abraham
- Original Message - From: sonali dhindwal Date: Monday, May 24, 2010 14:32 Subject: [gmx-users] simulation crashed because of LINCS error To: Discussion list for GROMACS users --- | > Hello All, > > With regard to my

[gmx-users] simulation crashed because of LINCS error

2010-05-23 Thread sonali dhindwal
Hello All, With regard to my previous post http://www.mail-archive.com/gmx-users@gromacs.org/msg30557.html I have done postion restrained energy minimisation  using  POSRES.itp file obtained from pdb2gmx. so that there should not be any large change in the strucutre of the protein. And after th