Re: [gmx-users] simulation box shape and length

On 6/15/12 8:47 AM, tarak karmakar wrote: Dear All, I am little unaware of choosing the shape and length of box while simulating protein in water. I saw in one of the GROMACS tutorials [ http://ringo.ams.sunysb.edu/index.php/MD_Simulation:_Protein_in_Water] in which they have kept the

[gmx-users] simulation box shape and length

Dear All, I am little unaware of choosing the shape and length of box while simulating protein in water. I saw in one of the GROMACS tutorials [ http://ringo.ams.sunysb.edu/index.php/MD_Simulation:_Protein_in_Water] in which they have kept the protein at the center of the box and the dista