Hi Rashi
To me, it seems more reasonable to use "pdb2gmx" for every molecule
that is supported by this utility (i.e. included in a rtp file) as
it will be more likely to be FF-compliant (at least for the default
rtp files) and thus compatible with your protein. PROD
Hello everyone..
I have 2 do the simulation of protein and peptide complex.I want to ask as
for protein and ligand complex we have 2 create topology of ligand using
prodrg sever mostly.Now if ligand is peptide then I have 2 build the
topology of peptide using pdb2gx or anyother means?Looking forw
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