Re: [gmx-users] quasiharmonic eigenvalue units / Schlitter entropy

2007-11-01 Thread David van der Spoel
Ran Friedman, Biochemisches Inst. wrote: Dear Marcin, You can contact me off list for a script that calculates the QH entropies from the output of g_covar. Also, IIRC there should be a version of g_covar that already does it somewhere (CVS-?). Yes indeed. Please compare the results with your

Re: [gmx-users] quasiharmonic eigenvalue units / Schlitter entropy

2007-10-31 Thread Ran Friedman, Biochemisches Inst.
Dear Marcin, You can contact me off list for a script that calculates the QH entropies from the output of g_covar. Also, IIRC there should be a version of g_covar that already does it somewhere (CVS-?). Ran. On Wed, 31 Oct 2007 17:40:45 + Marcin Krol <[EMAIL PROTECTED]> wrote: Dear All

[gmx-users] quasiharmonic eigenvalue units / Schlitter entropy

2007-10-31 Thread Marcin Krol
Dear All, Sorry for the repeated question, but I'm a bit lost when I want to get frequencies of modes from quasiharmonic analysis done with g_covar. From what I understood in QH omega = sqrt(kT/lambda), where omega is the radial frequency, k - Boltzmann const, T-temp, and lambda is the eigenva