Re: [gmx-users] protein in membrane

2011-07-30 Thread Justin A. Lemkul
Sweta Iyer wrote: Hi, I used the inflategro.pl script to insert my protein into the membrane and scaled down the lipids until it reached the recommended area per lipid value. After removing 4 lipid molecules, I started with an area of 90 square angstrom and reached a value of 65 square angstro

Re: [gmx-users] protein in membrane

2011-07-30 Thread wibke . sudholt
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[gmx-users] protein in membrane

2011-07-30 Thread Sweta Iyer
Hi, I used the inflategro.pl script to insert my protein into the membrane and scaled down the lipids until it reached the recommended area per lipid value. After removing 4 lipid molecules, I started with an area of 90 square angstrom and reached a value of 65 square angstrom within just 5 iterat

RE: [gmx-users] protein in membrane

2007-10-03 Thread Itamar Kass
ysics Journal" 31(3), 217-227. You will probably need mdrun_make_hole.tar.gz which is used as a modifier of gromacs 3.1.4. Best, Itamar -Original Message- From: [EMAIL PROTECTED] on behalf of mahbubeh zarrabi Sent: Thu 04/10/2007 06:52 To: gmx-users@gromacs.org Subject: [gmx-users]

[gmx-users] protein in membrane

2007-10-03 Thread mahbubeh zarrabi
Dear all i want to insert protein in popc.which practical protocol in gromacs is useful for me? thanks Tonight's top picks. What will you watch tonight? Preview the hottest shows on Yahoo! TV. http://tv.y