Re: [gmx-users] program crashes when -table option used

2006-07-14 Thread Dongsheng Zhang
rs > >Subject: Re: [gmx-users] program crashes when -table option used > >Date: Fri, 14 Jul 2006 02:13:54 -0400 > > > >Yang Ye, > > > >I just can't understand why the program ran fine in one way, but crashed > >in another way. If the two coordinates file

Re: [gmx-users] program crashes when -table option used

2006-07-14 Thread Berk Hess
By the way, it seems David has not told us how to input multiple tablep.xvg files, right? you can have one table.xvg and one tablep.xvg No, you can have multiple normal tables (see energygrp_table), but only one pair table. Berk. ___ gmx-users m

Re: [gmx-users] program crashes when -table option used

2006-07-14 Thread Berk Hess
From: Dongsheng Zhang <[EMAIL PROTECTED]> Reply-To: Discussion list for GROMACS users To: Discussion list for GROMACS users Subject: Re: [gmx-users] program crashes when -table option used Date: Fri, 14 Jul 2006 02:13:54 -0400 Yang Ye, I just can't understand why the program

Re: [gmx-users] program crashes when -table option used

2006-07-14 Thread David van der Spoel
Dongsheng Zhang wrote: Yang Ye, I just can't understand why the program ran fine in one way, but crashed in another way. If the two coordinates file are the same, how come did the second run give me large value of LJ_14? If it is possible, I can give you my two tpr file, you can do the test. p

Re: [gmx-users] program crashes when -table option used

2006-07-13 Thread Dongsheng Zhang
Yang Ye, I just can't understand why the program ran fine in one way, but crashed in another way. If the two coordinates file are the same, how come did the second run give me large value of LJ_14? If it is possible, I can give you my two tpr file, you can do the test. I used a coarse grained mod

Re: [gmx-users] program crashes when -table option used

2006-07-13 Thread Yang Ye
reduce timestep or further minimization/equilibration? Yang Ye Dongsheng Zhang wrote: Dear GMX users, I have a coarse-grained model whose nonbonded potentials are tabulated, so I have to use user defined potential in gromacs. With Yang Ye's great help, I can implement the new force field. How

[gmx-users] program crashes when -table option used

2006-07-13 Thread Dongsheng Zhang
Dear GMX users, I have a coarse-grained model whose nonbonded potentials are tabulated, so I have to use user defined potential in gromacs. With Yang Ye's great help, I can implement the new force field. However, the program always crashed because of Large VCM(group rest). I have done a test by r