Re: [gmx-users] problem with energy groups and mdrun -rerun option

2010-10-21 Thread Mark Abraham
On 22/10/2010 8:21 AM, jagannath mondal wrote: Hi, I have used gromacs 4.0.7 to do MD simulation of two solutes A & B in water ( solvent) . Initially, I had set "energy groups = system " and used mdrun to do the simulation. Now,I wanted to get the potential energy contribution from due to

Re: [gmx-users] problem with energy groups and mdrun -rerun option

2010-10-21 Thread Justin A. Lemkul
tin A. Lemkul //* wrote: From: Justin A. Lemkul Subject: Re: [gmx-users] problem with energy groups and mdrun -rerun option To: "Discussion list for GROMACS users" Date: Friday, 22 October, 2010, 2:56 AM jagannath mondal wrote: > Hi, > I have

Re: [gmx-users] problem with energy groups and mdrun -rerun option

2010-10-21 Thread jagannath mondal
: From: Justin A. Lemkul Subject: Re: [gmx-users] problem with energy groups and mdrun -rerun option To: "Discussion list for GROMACS users" Date: Friday, 22 October, 2010, 2:56 AM jagannath mondal wrote: > Hi, >   I have  used gromacs 4.0.7 to do  MD simulation of two solutes

Re: [gmx-users] problem with energy groups and mdrun -rerun option

2010-10-21 Thread Justin A. Lemkul
jagannath mondal wrote: Hi, I have used gromacs 4.0.7 to do MD simulation of two solutes A & B in water ( solvent) . Initially, I had set "energy groups = system " and used mdrun to do the simulation. Now,I wanted to get the potential energy contribution from due to interaction of A-

[gmx-users] problem with energy groups and mdrun -rerun option

2010-10-21 Thread jagannath mondal
Hi,  I have  used gromacs 4.0.7 to do  MD simulation of two solutes A & B in water ( solvent) . Initially, I had set "energy groups = system " and used mdrun to do the simulation. Now,I wanted to get the potential energy contribution from due to interaction of  A-A, B-B,A-B A-solvent, B-solvent,