Re: [gmx-users] problem in multichain protein solvation

Hi, > I tried to solvate an assembly of amyliod peptides (16 peptide), using > editconf and genbox respectively as follow, > editconf -f rotated.gro  -box  76 6 6 -center 0 0 0  -o rotated-box > > Nothing here does any rotation. Well, it seems something that was rotated goes in... that seems fine

Re: [gmx-users] problem in multichain protein solvation

On 13/05/11, Asmaa Elsheshiny wrote: > > I tried to solvate an assembly of amyliod peptides (16 peptide), using > editconf and genbox respectively as follow, > editconf -f rotated.gro  -box  76 6 6 -center 0 0 0  -o rotated-box > Nothing here does any rotation. > > then, > genbox -cs ffa

[gmx-users] problem in multichain protein solvation

I tried to solvate an assembly of amyliod peptides (16 peptide), using editconf and genbox respectively as follow, editconf -f rotated.gro -box 76 6 6 -center 0 0 0 -o rotated-box then, genbox -cs ffamber_tip3p.gro -cp rotated-box -p fragment -o sol when, I tried to visualize the protein using