Hi Frisco,
Are you by chance using a _united_ atom force field (GROMOS?). And are
you wondering where all you're non-polar hydrogens are? Please read
the manual (better) and read the papers about the force field you're
using. -ignh strips all hydrogens, which is handy if there are
hydrogens prese
Hello all,
I am confused about what the -ignh option of pdb2gmx actually does. I
have read the mailing list, the manual and many tutorials and short of
browsing the source cannot find a definite answer.
The man page claims that pdb2gmx will add hydrogens, however after using
the ignh option to ign
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