Re: [gmx-users] no output in g_dist

2011-09-08 Thread lina
On Thu, Sep 8, 2011 at 8:25 PM, aiswarya pawar wrote: > Hi users, > > To get the distance between water and protein i did - > >  g_dist -f md.xtc -s md.tpr -o distance.xvg -dist 1 -b 1 -e 11 > > from this i should obtain an output file as distance.xvg which i dont get. The -dist option: Print

Re: [gmx-users] no output in g_dist

2011-09-08 Thread Justin A. Lemkul
aiswarya pawar wrote: Hi users, To get the distance between water and protein i did - g_dist -f md.xtc -s md.tpr -o distance.xvg -dist 1 -b 1 -e 11 from this i should obtain an output file as distance.xvg which i dont get. Try without specifying -dist simultaneously. Also realize that t

[gmx-users] no output in g_dist

2011-09-08 Thread aiswarya pawar
Hi users, To get the distance between water and protein i did - g_dist -f md.xtc -s md.tpr -o distance.xvg -dist 1 -b 1 -e 11 from this i should obtain an output file as distance.xvg which i dont get. and my output is printed on the terminal as- t: 1 136 SOL 2336 OW 0.772373 (nm) t: 1 136