Re: [gmx-users] memory usage grows without bounds

Thank you. But I did new tests, and the problem does not appear if in the same pc I run the same simulation, but using a single core, here is the top after 73 min, and the memory mantains its initial value. Cpu(s): 53.2%us, 1.1%sy, 0.0%ni, 44.8%id, 0.0%wa, 0.3%hi, 0.5%si, 0.0%st Mem: 2569

[gmx-users] memory usage grows without bounds

Hello, the same happens to me on several computers, but it depends on the system. I'm sorry I cannot dig the examples right now to add more precise information. Could be shake? The system that fails is full of constraints. Marcelo. mdrun will not leak memory that badly. I would guess your outp

Re: [gmx-users] memory usage grows without bounds

mdrun will not leak memory that badly. I would guess your output buffers are not being flushed, so grow without bound. Mark On Oct 25, 2012 12:36 AM, "Pablo Serra" wrote: > Dear users, > I'm running a NVT simulation with gromacs 4.5.5,using > the command: > > mdrun -nt $NSL

[gmx-users] memory usage grows without bounds

Dear users, I'm running a NVT simulation with gromacs 4.5.5,using the command: mdrun -nt $NSLOTS and the memory usage grows without bounds until a crash with the message /opt/gridengine/default/spool/compute-0-8/job_scripts/1711: line 29: 25200 Killed /usr/local/bin/md