thanks. It was able to generate the needed files as indicated in the tutorial.
I trnasfered my working directory.
many thanks.
Bernard
--- On Wed, 2/2/11, Justin A. Lemkul wrote:
From: Justin A. Lemkul
Subject: Re: [gmx-users] luck
To: "Gromacs Users' List"
Date: Wednes
but that's a bit of
a guess.
Move the necessary files to a new location, in a directory named without spaces,
and try again.
-Justin
--- On *Wed, 2/2/11, Justin A. Lemkul //* wrote:
From: Justin A. Lemkul
Subject: Re: [gmx-users] luck
To: "Discussion list for GROMA
:
From: Justin A. Lemkul
Subject: Re: [gmx-users] luck
To: "Discussion list for GROMACS users"
Date: Wednesday, February 2, 2011, 2:15 AM
Mr Bernard Ramos wrote:
> Hi!
> I am actually following your lysozyme tutorial. I ve been using different
>pdb files including that
al, please)? What are the
contents of the working directory?
-Justin
--- On *Mon, 1/31/11, Mr Bernard Ramos //* wrote:
From: Mr Bernard Ramos
Subject: Re: [gmx-users] luck
To: jalem...@vt.edu, "Discussion list for GROMACS users"
Date: Monday, Janua
4.5.3
Source code file: futil.c, line:491
File input/output
1AKI.pdb
For more etc
--
--- On Mon, 1/31/11, Mr Bernard Ramos wrote:
From: Mr Bernard Ramos
Subject: Re: [gmx-users] luck
To: jalem...@vt.edu, "Discussion list for GROMACS users&q
--- On Mon, 1/31/11, Justin A. Lemkul wrote:
From: Justin A. Lemkul
Subject: Re: [gmx-users] luck
To: "Gromacs Users' List"
Date: Monday, January 31, 2011, 12:33 PM
Mr Bernard Ramos wrote:
> Do I need to type in g_luck instead?
>
Typing an email and waiting for a re
"filename.pdb" doesn't exist. You need to specify the actual name of your
input .pdb file; "filename.pdb" is just a generic name that shows you how to use
the program.
-Justin
--- On *Mon, 1/31/11, Justin A. Lemkul //* wrote:
From: Justin A. Lemkul
Subj
wrote:
From: Justin A. Lemkul
Subject: Re: [gmx-users] luck
To: "Discussion list for GROMACS users"
Date: Monday, January 31, 2011, 12:11 PM
Mr Bernard Ramos wrote:
> Hi everyone!
> I have two questions.
> 1. after I installed gromacs 4.5.3 and "which mdr
Mr Bernard Ramos wrote:
Do I need to type in g_luck instead?
Typing an email and waiting for a response takes far more time and effort than
simply trying it yourself ;)
-Justin
--- On *Mon, 1/31/11, Justin A. Lemkul //* wrote:
From: Justin A. Lemkul
Subject: Re: [gmx-users
Do I need to type in g_luck instead?
--- On Mon, 1/31/11, Justin A. Lemkul wrote:
From: Justin A. Lemkul
Subject: Re: [gmx-users] luck
To: "Discussion list for GROMACS users"
Date: Monday, January 31, 2011, 12:11 PM
Mr Bernard Ramos wrote:
> Hi everyone!
> I have two
Mr Bernard Ramos wrote:
Hi everyone!
I have two questions.
1. after I installed gromacs 4.5.3 and "which mdrun" was able to give
the correct path, I was not able to run "luck". Instead, "luck" gives an
error "command not found". Is this ok? What went wrong? Do I need to
install again gro
Hi everyone!
I have two questions.
1. after I installed gromacs 4.5.3 and "which mdrun" was able to give the
correct path, I was not able to run "luck". Instead, "luck" gives an error
"command not found". Is this ok? What went wrong? Do I need to install
again gromacs?
2. I tried doing "pd
- Original Message -
From: Emily Curtis
Date: Friday, May 14, 2010 5:12
Subject: [gmx-users] luck works but demo fails
To: gmx-users@gromacs.org
> I think that I finally managed to get gromacs installed correctly. When I
> type luck in the command line I get a random phrase.
Emily Curtis wrote:
I think that I finally managed to get gromacs installed correctly. When
I type luck in the command line I get a random phrase. When I try to
run "demo" I get the following error messages:
dyld: Library not loaded: libmkl_intel_lp64.dylib
Referenced from: /Users/emily/
I think that I finally managed to get gromacs installed correctly. When I
type luck in the command line I get a random phrase. When I try to run
"demo" I get the following error messages:
dyld: Library not loaded: libmkl_intel_lp64.dylib
Referenced from: /Users/emily/gromacsfolder/bin/pdb2gmx
Justin,
Thank you again! Your suggestion worked.
Emily
On Thu, May 6, 2010 at 11:55 AM, Justin A. Lemkul wrote:
>
>
> Emily Curtis wrote:
>
>> I was able to "make install".
>> *After typing ./luck *
>>
>> I got the following message: I was detained, I was restrained
>>
>> *Is that bad? Also
Emily Curtis wrote:
I was able to "make install".
*After typing ./luck *
I got the following message: I was detained, I was restrained
*Is that bad? Also, I am trying to run the tests and I keep getting:*
That's the purpose of luck - spit out random funny quotes.
ERROR: Can not find
I was able to "make install".
*After typing ./luck *
I got the following message: I was detained, I was restrained
*Is that bad? Also, I am trying to run the tests and I keep getting:*
ERROR: Can not find grompp in your path.
Please source GMXRC and try again.
Does anyone know how to fix thi
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