Hi, Andrew-
The choice of lmc-stats only affects the calculation of the weights,
it does not affect the calculation of the transition matrix.
There are two possibilities for the transition matrix; the estimated
one (which is just called 'Transition Matrix' -- we should probably
have a better name
When performing free energy calculations using the expanded ensemble
method, there is a barker and metropolis option for lmc-stats. Are the
corresponding transition probabilities computed with or without the
weighting factors? That is, are these probabilities biased or not?
Thank you,
Andrew
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