On 10/23/13 12:44 PM, Michelangelo Scordino wrote:
Sorry, i should want to be delete my contact from mailing list.
thanks
Unsubscribing is explained in the footer of every email that hits the list:
"* Please don't post (un)subscribe requests to the list. Use the
www interface or send it to
Sorry, i should want to be delete my contact from mailing list.
thanks
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On 6/17/13 10:15 AM, 라지브간디 wrote:
Dear gmx users,
I have simulated the heme protein using gromos43a5 ff. I have used virtual
sites2 for the CO ligand and it successfully runs without any error upto
equilibrium state ( em, nvt and npt). However,when i start
running production for 10 ns and
Dear gmx users,
I have simulated the heme protein using gromos43a5 ff. I have used virtual
sites2 for the CO ligand and it successfully runs without any error upto
equilibrium state ( em, nvt and npt). However,when i start
running production for 10 ns and it stopped step 17400 and shows few
On 5/11/13 9:56 AM, Christopher Neale wrote:
Perhaps it is just the way I am doing things then. From my viewing, there were
4 posts yesterday that required me to scroll horizontally when reading in my
browser (This line too will come out requiring scrolling on the gmx list page
that I find m
Perhaps it is just the way I am doing things then. From my viewing, there were
4 posts yesterday that required me to scroll horizontally when reading in my
browser (This line too will come out requiring scrolling on the gmx list page
that I find most useful):
http://lists.gromacs.org/pipermail/
On Sat, May 11, 2013 at 5:15 AM, Christopher Neale <
chris.ne...@mail.utoronto.ca> wrote:
> The lack of line-wrapping makes it a pain to read. It happens to my emails
> that are posted on this list
> (and I have seen others), unless I put explicit line-breaks in my posts,
> which I often forget to
The lack of line-wrapping makes it a pain to read. It happens to my emails that
are posted on this list
(and I have seen others), unless I put explicit line-breaks in my posts, which
I often forget to do.
Is there anything that can be done?
IMHP, this should be automatically handled, and I oft
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Please don't post (un)subscribe requests to the list. Use the
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On 19/05/2011 6:25 PM, Anna Marabotti wrote:
Dear administrators of gmx-users list,
I would like to report a problem in the gmx-users list archive (or at
least in its visualization in the Web site). Starting from 2011, when
I search in the archive on the Gromacs web site, I can see that
Dear administrators of gmx-users list,
I would like to report a problem in the gmx-users list archive (or at least
in its visualization in the Web site). Starting from 2011, when I search in
the archive on the Gromacs web site, I can see that multiple copies of
identical messages are reported in
On 2010-05-22 06.53, Mark Abraham wrote:
http://www.gromacs.org/Documentation/Gromacs_papers
- Original Message -
From: milad ekramnia
Date: Saturday, May 22, 2010 14:14
Subject: [gmx-users] list of published papers
To: gmx-users@gromacs.org
> Dear Gromacs users
> I can remem
http://www.gromacs.org/Documentation/Gromacs_papers
- Original Message -
From: milad ekramnia
Date: Saturday, May 22, 2010 14:14
Subject: [gmx-users] list of published papers
To: gmx-users@gromacs.org
> Dear Gromacs users
> I can remember up to one year ago oldwww.gromacs indexed
Dear Gromacs users
I can remember up to one year ago oldwww.gromacs indexed a list of published
papers which were based on gromacs platform .
but now I can't find it anymore .
Anyone knows whether the list is still on the server or it has been removed ?
regards
--
Milad Ekramnia
Physics Depart
Hello,
does anybody know how to get an exclusive list of matching searches
while searching the gromacs mailing list using the new search tool?
I have tried:
essential dynamics Address not mapped
"essential dynamics" and "Address not mapped"
"essential dynamics" AND "Address not mapped"
"essen
for GROMACS users
Sent: Thursday, November 27, 2008 12:56:26 PM
Subject: RE: [gmx-users] List of all bonds form tpr file?
Hi,
The format that is dumped by gmxdump is now the processed topology.
The bonded interactions are now only stored per molecule type.
I have made a option -sys to gmxdump, the
Hi,
The format that is dumped by gmxdump is now the processed topology.
The bonded interactions are now only stored per molecule type.
I have made a option -sys to gmxdump, the source code is attached.
Could you try if this does what you want and report back?
Berk
Sent: Wednesday, November 26, 2008 1:00:10 PM
Subject: RE: [gmx-users] List of all bonds form tpr file?
I just realized that in 4.0 I modified things such that it only
prints the bonds per molecule type.
It would be quite easy to modify a program to write all bonds.
(mk_angdx for instance).
If yo
atoms_mol
from the molblock print in the gmxdump output.
Berk
From: [EMAIL PROTECTED]
To: gmx-users@gromacs.org
Subject: RE: [gmx-users] List of all bonds form tpr file?
Date: Wed, 26 Nov 2008 11:52:45 +0100
Hi,
gmxdump in 4.0 still dumps all bonds.
I don't know what causes you not t
Hi,
gmxdump in 4.0 still dumps all bonds.
I don't know what causes you not to see them.
Berk
> Date: Wed, 26 Nov 2008 02:09:08 -0800
> From: [EMAIL PROTECTED]
> To: gmx-users@gromacs.org
> Subject: [gmx-users] List of all bonds form tpr file?
>
> Dear All,
> We have
Dear All,
We have a script, which visualizes the bonds in the coarse-grained system
simulated in gromacs. In gromacs 3.x it was reading dumps of the tpr files and
extracted BONDS records. Now in 4.x it does not work because gmxdump no longer
outputs all bonds in the system. Is it possible to ext
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