I'm also interested in doing this with GROMACS but couldn't find a way
yet. In my case I'm interested in applying it to REMD simulations in which
large conformational changes occur, which makes the implementation more
difficult because the shape of the water layer would be irregular and
change
Hi all.
I want to create a system with hybrid solvent (explicit/implicit). My
system is large enough to calculate it with explicit SOL. But it is
critical to study the behavior of several water molecules in the site. The
idea is to generate a layer of explicit water molecules around the protein
mo
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