Re: [gmx-users] how to understand this sentence

2011-11-30 Thread lina
Now I used mdrun -nt 2 it showed: Fatal error: One of the box vectors has become shorter than twice the cut-off length or box_yy-|box_zy| or box_zz has become smaller than the cut-off. and mdrun -nt 1 it showed: Program mdrun, VERSION 4.5.4-dev-20110711-dadcb Source code file: /var/local/cache/

Re: [gmx-users] how to understand this sentence

2011-11-30 Thread lina
On Thu, Dec 1, 2011 at 7:45 AM, Mark Abraham wrote: > On 1/12/2011 3:25 AM, lina wrote: >> >> The Y-size of the box (1.999239) times the triclinic skew factor >> (1.00) is smaller than the number of DD cells (2) times the >> smallest allowed cell size (1.00) >> >> I don't understand the fa

Re: [gmx-users] how to understand this sentence

2011-11-30 Thread Mark Abraham
On 1/12/2011 3:25 AM, lina wrote: The Y-size of the box (1.999239) times the triclinic skew factor (1.00) is smaller than the number of DD cells (2) times the smallest allowed cell size (1.00) I don't understand the fatal error message it has been given during a simple run, I tested wit

RE: [gmx-users] how to understand this sentence

2011-11-30 Thread Dallas Warren
nt: Thursday, 1 December 2011 3:26 AM > To: Discussion list for GROMACS users > Subject: [gmx-users] how to understand this sentence > > The Y-size of the box (1.999239) times the triclinic skew factor > (1.00) is smaller than the number of DD cells (2) times the > smalle

[gmx-users] how to understand this sentence

2011-11-30 Thread lina
The Y-size of the box (1.999239) times the triclinic skew factor (1.00) is smaller than the number of DD cells (2) times the smallest allowed cell size (1.00) I don't understand the fatal error message it has been given during a simple run, I tested with large box already, during editconf