Re: [gmx-users] grompp in KALP15-DPPC

2012-08-25 Thread Shima Arasteh
 Thanks for your reply. Sincerely, Shima - Original Message - From: Justin Lemkul To: Discussion list for GROMACS users Cc: Sent: Saturday, August 25, 2012 9:16 PM Subject: Re: [gmx-users] grompp in KALP15-DPPC On 8/25/12 12:41 PM, Shima Arasteh wrote: > The number of D

Re: [gmx-users] grompp in KALP15-DPPC

2012-08-25 Thread Justin Lemkul
m: Justin Lemkul To: Shima Arasteh ; Discussion list for GROMACS users Cc: Sent: Saturday, August 25, 2012 8:59 PM Subject: Re: [gmx-users] grompp in KALP15-DPPC On 8/25/12 12:26 PM, Shima Arasteh wrote: Hi, I am doing the simulation of KALP15 in DPPC following the Justin's tutorial. For

Re: [gmx-users] grompp in KALP15-DPPC

2012-08-25 Thread Shima Arasteh
sible?   Sincerely, Shima - Original Message - From: Justin Lemkul To: Shima Arasteh ; Discussion list for GROMACS users Cc: Sent: Saturday, August 25, 2012 8:59 PM Subject: Re: [gmx-users] grompp in KALP15-DPPC On 8/25/12 12:26 PM, Shima Arasteh wrote: > Hi, > I a

Re: [gmx-users] grompp in KALP15-DPPC

2012-08-25 Thread Justin Lemkul
On 8/25/12 12:26 PM, Shima Arasteh wrote: Hi, I am doing the simulation of KALP15 in DPPC following the Justin's tutorial. For the step of solvation I ran this command: # genbox -cp system.gro -cs spc216.gro -o system_solv.gro -p topol.top The output of this step is as here: Reading solute co

[gmx-users] grompp in KALP15-DPPC

2012-08-25 Thread Shima Arasteh
Hi, I am doing the simulation of KALP15 in DPPC following the Justin's tutorial. For the step of solvation I ran this command: # genbox -cp system.gro -cs spc216.gro -o system_solv.gro -p topol.top The output of this step is as here: Reading solute configuration frame t= 1.000 Containing 17503 at