RE: [gmx-users] gromacs-4.0.2, parallel performance in two quad core xeon machines

Subject: RE: [gmx-users] gromacs-4.0.2, parallel performance in two quad core xeon machines To: gmx-users@gromacs.org Hello, thank you for your answer. I just wondering though. How am I supposed to have a system with more than 9 atoms, while the gro file has a fixed format giving up to 5

RE: [gmx-users] gromacs-4.0.2, parallel performance in two quad core xeon machines

better performance using gromacs 4 using more nodes? Which might be the limit there in such machines.  Thank you once again,Nikos --- Berk Hess schrieb am Mi, 18.2.2009: Von: Berk Hess Betreff: RE: [gmx-users] gromacs-4.0.2, parallel performance in two quad core xeon machines An: lastexile

[gmx-users] gromacs-4.0.2, parallel performance in two quad core xeon machines

Hello, we have built a cluster with nodes that are comprised by the following: dual core Intel(R) Xeon(R) CPU E3110 @ 3.00GHz. The memory of each node has 16Gb of memory. The switch that we use is a dell power connect model. Each node has a Gigabyte ethernet card. I tested the performance for