Re: [gmx-users] generating topology for artificial residues

Grange Hermitage wrote: Hi all, What approach to use to generate a topology file for peptides which include artificial residues such as serine with its sidechain extended by two carbons to double bond with another such residue i.e. CA-CB-OG-C1-C3=C4-C2-OG-CB-CA Also I need to generate a

[gmx-users] generating topology for artificial residues

Hi all,   What approach to use to generate a topology file for peptides which include artificial residues such as serine with its sidechain extended by two carbons to double bond with another such residue i.e. CA-CB-OG-C1-C3=C4-C2-OG-CB-CA   Also I need to generate a topology for another type of